![]() We train by toggling between the Channel views and train visually. We are thinking of applying the following workflow before training the linear classifier:ġ) "Calculate Image" method to add two different channels together to get a composite image we'll call CompImage.ģ) "Calculate Morphology Properties" of CompImage.Ĥ) "Calculate Intensity Properties" of Channel A and then Channel B.ĥ) "Select Population - Linear Classifer" of CompImage, where we ask it to identify puncta that shows up only in ChannelA, only in ChannelB, and then overlapping puncta. I am trying to quantify co-localizations of puncta and also compare those co-localizations to puncta that only carry one type of marker. I have a quick question about Columbus' "Select Populations - Linear Classifier" method. So as of now I do not have any feasible method to convert a CDX file to a printable (PDF) document.Īny suggestions on how to get a high quality PDF from what I see on my screen in ChemDraw? ChemDraw 18 on a different machine shows the same behaviour, while ChemDraw 13 exports without the PNGs. pasting into Word: no alignment issues, no transparency issues, but low quality PDF export pasting into InkScape: text alignment is OK and also structure/PNG, but PNG transparancy is a problem When I open the EPS in illustrator, text alignment is correct but PNGs are misaligned. pasting into Illustrator CS6 and PDF export: no shift between PNG and structures, but misalignment of text (including atoms in structures). While this shift is not a lot (maybe a few mm on an A4 page), it is annoying and for me makes the file unusable. Unfortunately, ChemDraw does not offer PDF export (a feature that should be standard given the wide spread of PDF) and EPS export does not work properly - chemical structures are shifted relative to PNGs. The document contains chemical structures, text and PNGs with transparency. I am trying to export from ChemDraw 19.1.0.8 to PDF or EPS. Thank for any help you may be able to provide. I am currently using version 19.0 of ChemScript. ![]() Has anyone encountered this scenario themselves? Is there any advice on anything I can do to the SMILES prior to attempting the RemoveSaltsAndSolvents? My current code reads in the SMILES from a file and then uses the RemoveSaltsAndSolvents method of a SaltTable instance, populated with my desired salts, to attempt the salt stripping. However, I was wondering if I am doing something wrong with the salt stripping or if this is just a bug. ![]() I will continue debugging to determine why my code does not always properly handle the exception. It is inconsistent, but sometimes my code can handle the exception and sometimes my code crashes my application. The problem I have encountered is that when I attempt to salt strip this SMILES string using RemoveSaltsAndSolvents, I get an AccessViolationException in my C# code. In this example there are two copies of the compound structure and one copy of the salt structure. However, for some compounds, the compound/salt ratio is not one-to-one and the SMILES representation may repeat either the compound and/or the salt part of the SMILES. For most structures, there is one part of the SMILES which represents the base chemical structure for the compound and another part of the SMILES which represents the salt with the two parts separated by a period, assuming the compound is stored with a salt. Commonly the CRO file includes SMILES which represent the chemical structure of what would be shipped, i.e. The code is written in C# and I am using the ChemScript RemoveSaltsAndSolvents method. The product can be downloaded as well freely from the author's website.I have automated code that processes a CRO compound collection database file containing SMILES. The download manager is in no way affiliated or endorsed by the author of this product. During the download process we may show commercial offers, such as a toolbar or other browser add-ons. This download is managed by our ad-supported smart download manager. The Soft32 Downloader is not installed to the User’s computer, and the User must manually delete the Soft32 Downloader executable. The Soft32 Downloader launches the installation of the downloaded software products. In addition, if a sponsored software offer, like for example a toolbar, will be offered, it shall change the User’s home page, default search settings and 404-error traffic, in the event the User selects such options. ![]() When you run Soft32 Downloader, you implicitly accept the terms of use, privacy policy and EULA herein, and that you know about Soft32 Downloader. Soft32 Downloader is an executable Windows program that enables you to download computer programs, making the download process much faster and showing a progress bar. The program you want to download will be downloaded through the Soft32 Downloader.
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